ClustEval | Parameter Optimization Run 'bonemarrow

ClustEval clustering evaluation framework

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Parameter Optimization Run 'bonemarrow_fixLabels'

Information	Value
Name	bonemarrow_fixLabels.run
Data configurations	boneMarrowGeneExpr_fixLabels_spearmanDist.dataconfig
Program configurations	TransClust_2 clara cluster_dp Spectral_Clustering MCODE DBSCAN Hierarchical_Clustering2 cmeans_3membexp DensityCut Fanny_Clustering_3membexp SOM clusterONE_norm agnes KMedoids_Clustering diana KMeans_Clustering APcluster_1 MCL_norm
Quality measures	Silhouette Value (R) F1-Score F2-Score False Discovery Rate False Positive Rate Rand Index Sensitivity Specificity Davies Bouldin Index (R) Dunn Index (R) Fowlkes Mallows Index (R) Jaccard Index (R) Rand Index (R) V-Measure
Parameter Optimization Settings (TransClust_2)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: T
Parameter Optimization Settings (clara)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k
Parameter Optimization Settings (cluster_dp)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: dc k
Parameter Optimization Settings (Spectral_Clustering)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k
Parameter Optimization Settings (MCODE)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: cutoff haircut fluff v
Parameter Optimization Settings (DBSCAN)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: eps MinPts
Parameter Optimization Settings (Hierarchical_Clustering2)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k method
Parameter Optimization Settings (cmeans_3membexp)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k m
Parameter Optimization Settings (DensityCut)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: K alpha
Parameter Optimization Settings (Fanny_Clustering_3membexp)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k membexp
Parameter Optimization Settings (SOM)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: x y
Parameter Optimization Settings (clusterONE_norm)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: s d
Parameter Optimization Settings (agnes)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k method
Parameter Optimization Settings (KMedoids_Clustering)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k
Parameter Optimization Settings (diana)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k
Parameter Optimization Settings (KMeans_Clustering)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k
Parameter Optimization Settings (APcluster_1)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: preference maxits convits dampfact
Parameter Optimization Settings (MCL_norm)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: I