ClustEval | Parameter Optimization Run 'all_except_mcode_vs_all_except_fraenti_2'

ClustEval clustering evaluation framework

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Parameter Optimization Run 'all_except_mcode_vs_all_except_fraenti_2'

Information	Value
Name	all_except_mcode_vs_all_except_fraenti_2.run
Data configurations	chang_spiral.dataconfig gionis_aggregation.dataconfig veenman_r15.dataconfig chang_pathbased.dataconfig astral_40.dataconfig ppi_mips.dataconfig fu_flame.dataconfig astral_40_seq_blast_100.dataconfig zahn_compound.dataconfig
Program configurations	TransClust_2 cluster_dp Spectral_Clustering DBSCAN Hierarchical_Clustering2 Fanny_Clustering_3membexp SOM KMedoids_Clustering KMeans_Clustering APcluster_1 clusterONE MCL_norm
Quality measures	Silhouette Value (R) F1-Score F2-Score False Discovery Rate False Positive Rate Rand Index Sensitivity Specificity Davies Bouldin Index (R) Dunn Index (R) Fowlkes Mallows Index (R) Jaccard Index (R) Rand Index (R) V-Measure
Parameter Optimization Settings (TransClust_2)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: T
Parameter Optimization Settings (cluster_dp)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: dc k
Parameter Optimization Settings (Spectral_Clustering)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k
Parameter Optimization Settings (DBSCAN)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: eps MinPts
Parameter Optimization Settings (Hierarchical_Clustering2)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k method
Parameter Optimization Settings (Fanny_Clustering_3membexp)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k membexp
Parameter Optimization Settings (SOM)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: x y
Parameter Optimization Settings (KMedoids_Clustering)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k
Parameter Optimization Settings (KMeans_Clustering)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: k
Parameter Optimization Settings (APcluster_1)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: preference maxits convits dampfact
Parameter Optimization Settings (clusterONE)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: s d
Parameter Optimization Settings (MCL_norm)	Method: DivisiveParameterOptimizationMethod Criterion: F1-Score Parameter: I