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Here you see a comparison matrix how well this clustering method performs on different datasets (rows). Where the performance is measured with different clustering quality measures (columns).

You can reorder the matrix by a certain column, to see on which dataset this clustering method performs best on, when measures by the corresponding clustering quality measure of that column.

How well does 'Markov Clustering' perform on different datasets?


Dataset Type Davies Bouldin Index (R) Dunn Index (R) F1-Score F2-Score False Discovery Rate False Positive Rate Fowlkes Mallows Index (R) Jaccard Index (R) Rand Index Rand Index (R) Sensitivity Silhouette Value (R) Specificity V-Measure
brown 0.49 2.769 0.923 0.948 0.012 0.003 0.988 0.976 0.995 0.995 1.0 0.772 0.997 0.955
fu_flame Infinity -Infinity 0.689 0.841 0.464 1.0 0.732 0.536 0.536 0.536 1.0 NaN 0.0 0.0
chang_pathbased 0.479 4.159 0.65 0.742 0.471 0.352 0.647 0.464 0.696 0.696 1.0 NaN 0.648 0.47
ppi_mips 0.31 3.236 0.821 0.888 0.291 0.007 0.839 0.705 0.993 0.993 1.0 0.016 0.993 0.951
chang_spiral Infinity -Infinity 0.5 0.714 0.669 1.0 0.576 0.331 0.331 0.331 1.0 NaN 0.0 0.0
astral_40_strsim 0.538 2.041 0.645 0.675 0.198 0.001 0.466 0.294 0.991 0.991 1.0 NaN 0.999 0.857
astral_40_seqsim_beh 0.899 2.014 0.649 0.613 0.304 0.001 0.514 0.332 0.991 0.991 1.0 NaN 0.999 0.832
zahn_compound Infinity -Infinity 0.381 0.578 0.753 1.0 0.497 0.247 0.247 0.247 1.0 NaN 0.0 0.0
fraenti_s3 Infinity -Infinity 0.125 0.263 0.933 1.0 0.258 0.067 0.067 0.067 1.0 NaN 0.0 0.0
bone_marrow_fixLabels Infinity NaN 0.537 0.731 0.639 1.0 0.601 0.361 0.361 NaN 1.0 NaN 0.0 0.0
coli_state Infinity -Infinity 0.53 0.698 0.609 1.0 0.625 0.391 0.391 0.391 1.0 NaN 0.0 0.0
coli_find Infinity -Infinity 0.221 0.394 0.873 1.0 0.356 0.127 0.127 0.127 1.0 NaN 0.0 0.0
coli_need Infinity -Infinity 0.55 0.739 0.613 1.0 0.622 0.387 0.387 0.387 1.0 NaN 0.0 0.0
coli_time Infinity -Infinity 0.403 0.597 0.736 1.0 0.513 0.264 0.264 0.264 1.0 NaN 0.0 0.0
gionis_aggregation Infinity -Infinity 0.345 0.543 0.783 1.0 0.465 0.217 0.217 0.217 1.0 NaN 0.0 0.0
veenman_r15 Infinity -Infinity 0.125 0.263 0.935 1.0 0.255 0.065 0.065 0.065 1.0 NaN 0.0 0.0
synthetic_spirals 0.657 3.042 0.667 0.833 0.502 0.5 0.706 0.498 0.498 0.498 1.0 NaN 0.5 0.0
synthetic_cassini Infinity -Infinity 0.524 0.726 0.643 1.0 0.598 0.357 0.357 0.357 1.0 NaN 0.0 0.0
twonorm_100d Infinity -Infinity 0.667 0.833 0.503 1.0 0.705 0.497 0.497 0.497 1.0 NaN 0.0 0.0
twonorm_50d Infinity -Infinity 0.667 0.833 0.503 1.0 0.705 0.497 0.497 0.497 1.0 NaN 0.0 0.0
synthetic_cuboid Infinity -Infinity 0.415 0.635 0.739 1.0 0.511 0.261 0.261 0.261 1.0 NaN 0.0 0.0
astral1_161 0.576 1.993 0.596 0.651 0.388 0.036 0.465 0.295 0.852 0.852 1.0 NaN 0.964 0.59
tcga Infinity -Infinity 0.678 0.806 0.446 1.0 0.744 0.554 0.554 0.554 1.0 NaN 0.0 0.0
bone_marrow 0.623 2.657 0.783 0.875 0.369 0.341 0.783 0.62 0.777 0.777 1.0 NaN 0.659 0.645
zachary 0.708 2.205 1.0 1.0 0.0 0.0 1.0 1.0 1.0 1.0 1.0 NaN 1.0 1.0