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How well do clustering methods perform on 'ppi_mips'?


Program Davies Bouldin Index (R) Dunn Index (R) F1-Score F2-Score False Discovery Rate False Positive Rate Fowlkes Mallows Index (R) Jaccard Index (R) Rand Index Rand Index (R) Sensitivity Silhouette Value (R) Specificity V-Measure
CLARA -- -- -- -- -- -- -- -- -- -- -- -- -- --
Self Organizing Maps -- -- -- -- -- -- -- -- -- -- -- -- -- --
Spectral Clustering 0.753 2.022 0.535 0.598 0.46 0.0 0.582 0.407 0.985 0.985 0.991 0.0 1.0 0.817
clusterdp 0.754 NaN 0.311 0.269 0.336 0.0 NaN 0.067 0.984 0.984 0.979 NaN 1.0 0.803
HDBSCAN -- -- -- -- -- -- -- -- -- -- -- -- -- --
AGNES 1.144 NaN 0.33 0.284 0.129 0.0 NaN 0.076 0.984 0.984 1.0 NaN 1.0 0.809
c-Means 0.494 NaN 0.306 0.26 0.936 0.0 NaN 0.024 0.984 0.984 1.0 0.012 1.0 0.8
k-Medoids (PAM) 0.311 NaN 0.822 0.891 0.0 0.0 0.833 0.695 0.993 0.993 1.0 0.015 1.0 0.952
DIANA Infinity NaN 0.334 0.271 0.03 0.0 NaN 0.33 0.989 NaN 1.0 NaN 1.0 0.82
DBSCAN 0.491 NaN 0.89 0.914 0.144 0.003 0.912 0.836 0.997 0.997 1.0 NaN 0.997 0.968
Hierarchical Clustering 0.113 NaN 0.88 0.916 0.0 0.0 NaN 0.811 0.996 0.996 1.0 0.958 1.0 0.963
fanny 0.0 NaN 0.888 0.925 0.17 0.0 NaN 0.824 0.997 0.997 1.0 0.945 1.0 0.968
k-Means -- -- -- -- -- -- -- -- -- -- -- -- -- --
DensityCut -- -- -- -- -- -- -- -- -- -- -- -- -- --
clusterONE 0.208 2.5 0.87 0.912 0.192 0.004 0.889 0.794 0.996 0.996 1.0 NaN 0.996 0.96
Affinity Propagation 0.674 1.623 0.17 0.254 0.972 0.567 0.168 0.028 0.443 0.443 1.0 NaN 0.433 0.384
Markov Clustering 0.31 3.236 0.821 0.888 0.291 0.007 0.839 0.705 0.993 0.993 1.0 0.016 0.993 0.951
Transitivity Clustering 0.0 NaN 0.881 0.92 0.183 0.0 NaN 0.808 0.996 0.996 1.0 NaN 1.0 0.965
MCODE -- -- -- -- -- -- -- -- -- -- -- -- -- --