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clustering evaluation framework
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bone_marrow_fixLabels
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Best Qualities
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General
Statistics
Best Qualities
Best Parameters
All Clusterings
Hints:
How well do clustering methods perform on 'bone_marrow_fixLabels'?
Program
Davies Bouldin Index (R)
Dunn Index (R)
F1-Score
F2-Score
False Discovery Rate
False Positive Rate
Fowlkes Mallows Index (R)
Jaccard Index (R)
Rand Index
Rand Index (R)
Sensitivity
Silhouette Value (R)
Specificity
V-Measure
CLARA
0.258
2.367
0.885
0.874
0.0
0.0
0.839
0.716
0.892
0.892
1.0
NaN
1.0
0.79
Self Organizing Maps
0.665
2.285
0.754
0.874
0.451
0.465
0.741
0.549
0.703
NaN
1.0
0.209
0.535
0.665
Spectral Clustering
0.593
2.687
0.973
0.973
0.032
0.002
0.944
0.894
0.959
0.959
1.0
0.352
0.998
0.906
clusterdp
0.0
NaN
0.974
0.974
0.0
0.0
NaN
0.901
0.963
NaN
1.0
NaN
1.0
0.911
HDBSCAN
0.0
NaN
0.748
0.848
0.0
0.0
NaN
0.571
0.809
NaN
1.0
NaN
1.0
0.645
AGNES
0.433
NaN
0.948
0.947
0.067
0.013
0.893
0.807
0.923
NaN
1.0
NaN
0.987
0.818
c-Means
NaN
NaN
0.791
0.869
0.339
0.258
0.767
0.611
0.795
NaN
0.89
0.26
0.742
0.581
k-Medoids (PAM)
0.193
2.885
0.948
0.947
0.0
0.0
0.896
0.806
0.929
0.929
0.866
0.366
1.0
0.849
DIANA
NaN
NaN
0.896
0.862
0.035
0.016
0.852
0.732
0.9
NaN
1.0
NaN
0.984
0.801
DBSCAN
0.0
NaN
0.537
0.731
0.639
0.0
NaN
0.361
0.639
NaN
1.0
NaN
1.0
0.442
Hierarchical Clustering
0.372
NaN
1.0
1.0
0.0
0.0
1.0
1.0
1.0
NaN
1.0
0.371
1.0
1.0
fanny
0.414
NaN
0.973
0.973
0.055
0.018
0.944
0.894
0.959
NaN
1.0
NaN
0.982
0.906
k-Means
0.593
NaN
0.973
0.973
0.047
0.004
0.944
0.894
0.959
NaN
1.0
0.352
0.996
0.906
DensityCut
0.623
NaN
0.918
0.918
0.199
0.127
0.852
0.74
0.885
NaN
1.0
0.292
0.873
0.8
clusterONE
Infinity
NaN
0.537
0.731
0.639
1.0
0.601
0.361
0.361
NaN
1.0
NaN
0.0
0.0
Affinity Propagation
0.582
NaN
1.0
1.0
0.0
0.0
1.0
1.0
1.0
NaN
1.0
NaN
1.0
1.0
Markov Clustering
Infinity
NaN
0.537
0.731
0.639
1.0
0.601
0.361
0.361
NaN
1.0
NaN
0.0
0.0
Transitivity Clustering
0.0
Infinity
0.986
0.979
0.0
0.0
NaN
0.929
0.974
0.974
1.0
NaN
1.0
0.952
MCODE
Infinity
-Infinity
0.537
0.731
0.639
1.0
0.601
0.361
0.361
0.361
1.0
NaN
0.0
0.0